Table 2 SNPs analyzed in complete case-control study population including allelic variants, position, gene region, genotype call rate, and minor allele frequencies as stratified by race and case/control status.
SNP rs number – Alleles | Position* – Region | Call Rate | Allele Frequency**/N | |||
|---|---|---|---|---|---|---|
African-American | Caucasians | |||||
Cases | Controls | Cases | Controls | |||
rs2420034 – A/T | 168937699 – Intron 1 | 85% | 0.17/99 | 0.11/85 | 0.49/69 | 0.45/85 |
rs6797312 – A/T | 168969997 – Intron 1 | 98% | 0.43/104 | 0.42/89 | 0.64/93 | 0.56/89 |
rs6775296 – A/G | 168973594 – Intron 1 | 92% | 0.14/94 | 0.19/82 | 0.10/93 | 0.07/89 |
rs2055028 – A/G | 169013200 – Intron 6 | 98% | 0.24/106 | 0.23/88 | 0.10/92 | 0.14/96 |
rs1027242 – C/T | 169060921-3' untranslated | 83% | 0.48/86 | 0.44/76 | 0.47/78 | 0.47/83 |