Association of the MMP-9 polymorphism and ischemic stroke risk in southern Chinese Han population

BMC Neurology

Table 5 rs3787268 and variants with r² ≥ 0.8

SNP	chr	pos (hg38)	LD (r²)	LD (D’)	Ref	Alt	Gene	Functional annotation
rs25610751	20	45,991,015	0.87	0.94	C	G	18 kb 5′ of MMP9
rs6073980	20	45,991,065	0.86	0.94	G	A	18 kb 5′ of MMP9
rs6073983	20	46,001,252	0.89	0.98	A	T	18 kb 5′ of MMP9
rs3761157	20	46,006,183	98	0.99	C	T	18 kb 5′ of MMP9
rs3787268	20	46,013,092	1	1	G	A	MMP9	intronic
rs3918262	20	46,015,131	1	1	A	G	MMP9	intronic
rs6073989	20	46,022,571	0.95	0.98	G	T	RP11-465 L10.7	intronic
rs16991010	20	46,023,675	0.95	0.98	A	C	RP11-465 L10.7	intronic
rs6130998	20	46,024,480	0.95	0.98	C	T	RP11-465 L10.7	intronic
rs6130999	20	46,026,853	0.95	0.98	G	A	RP11-465 L10.7	intronic
rs6073991	20	46,027,473	0.95	0.98	A	G	RP11-465 L10.7	intronic
rs13039389	20	46,031,067	0.91	0.97	G	C	SLC12A5	intronic
rs6131001	20	46,032,717	0.94	0.98	C	T	SLC12A5	intronic

LD linkage disequilibrium, SNP single nucleotide polymorphism, Ref reference allele, Alt altered allele

ISSN: 1471-2377