A common genetic factor for Parkinson disease in ethnic Chinese population in Taiwan
BMC Neurology volume 6, Article number: 47 (2006)
Parkinson's disease (PD) is the most common neurodegenerative movement disorder, characterized clinically by resting tremor, bradykinesia, postural instability and rigidity. The prevalence of PD is approximately 2% of the population over 65 years of age and 1.7 million PD patients (age ≥ 55 years) live in China. Recently, a common LRRK2 variant Gly2385Arg was reported in ethnic Chinese PD population in Taiwan. We analyzed the frequency of this variant in our independent PD case-control population of Han Chinese from Taiwan.
305 patients and 176 genetically unrelated healthy controls were examined by neurologists and the diagnosis of PD was based on the published criteria. The region of interest was amplified with standard polymerase chain reaction (PCR). PCR fragments then were directly sequenced in both forward and reverse directions. Differences in genotype frequencies between groups were assessed by the X 2 test, while X 2 analysis was used to test for the Hardy-Weinberg equilibrium.
Of the 305 patients screened we identified 27 (9%) with heterozygous G2385R variant. This mutation was only found in 1 (0.5%) in our healthy control samples (odds ratio = 16.99, 95% CI: 2.29 to 126.21, p = 0.0002). Sequencing of the entire open reading frame of LRRK2 in G2385R carriers revealed no other variants.
These data suggest that the G2385R variant contributes significantly to the etiology of PD in ethnic Han Chinese individuals. With consideration of the enormous and expanding aging Chinese population in mainland China and in Taiwan, this variant is probably the most common known genetic factor for PD worldwide.
Parkinson's disease (PD) is the most common neurodegenerative movement disorder, characterized clinically by resting tremor, bradykinesia, postural instability and rigidity. The prevalence of PD is approximately 2% of the population over 65 years of age and 1.7 million PD patients (age ≥ 55 years) live in China [1, 2]. Mutations in five genes have been shown to cause parkinsonism: α-synuclein (dominant), parkin (recessive), DJ-1 (recessive), PINK1 (recessive) and LRRK2 (dominant) . Since LRRK2 mutation has been reported as a cause of PD, a number of LRRK2 substitutions have been identified to be pathogenic . To date, the most common genetic variant underlying sporadic PD is the G2019S variant reported at up to 40% frequencies in different Caucasian populations . The genotype-phenotype correlations have been studies on this mutation . The clinical manifestations of the G2019S carriers closely resemble those of typical PD with pleomorphic pathological findings [7, 8]. The rarity of the G2019S mutation in Chinese population suggests the occurrence of this mutation resulted from a common European founder . Recently, a common variant Gly2385Arg was reported in ethnic Chinese PD population in Taiwan [10, 11]. In this study, we analyzed the frequency of this variant in our independent PD case-control population of Han Chinese from Taiwan and explore the genotype-phenotype correlations of this prevalent alteration in our Taiwanese PD cohort.
305 patients with sporadic idiopathic PD (46% Female, Mean age of onset: 61.8 ± 10.6 years, Range: 30–91 years) were selected from the neurology clinic of Chang-Gung Memorial Hospital. 176 unrelated healthy adult volunteers (46% female, Mean Age at exam: 59.6 ± 9.6 years, Range: 38–86 years) were matched for ethnic origin and area of residence. These normal control individuals are genetically unrelated to the individuals in the patient group. All patients were examined by a neurologist (YR Wu or CM Chen), and the diagnosis of PD was based on the published criteria . Patients with evidence of secondary parkinsonism or with atypical features such as early dementia, ophthalmoplegia, early autonomic failure, and pyramidal signs were not included in this study. All examinations were performed after obtaining informed consent under a protocol approved by the internal ethics and scientific boards of National Institutes of Health.
Genotyping and statistical analysis
Genomic DNA was extracted from peripheral blood using standard protocols. The region of interest was polymerase chain reaction (PCR)-amplified as previously described. Assay of the G7153A polymorphism in all the individuals was performed by PCR amplification with primer pair 5'-ATGCAGCTTTCAGTGATTCCA-3' (forward) and 5'-TCTGAAAAGATGGTGCTGAGAAG-3' (reverse). Cycle sequencing in forward and reverse directions was performed on purified PCR products with the Big Dye Terminator chemistry and run on an ABI 3100 automated DNA sequencer. (Applied Biosystems, Foster City, CA). Differences in genotype frequencies between groups were assessed by the X 2 test. X 2 analysis was used to test for the Hardy-Weinberg equilibrium (HWE).
Of the 305 patients screened we identified 27 (9%) with heterozygous for the G2385R variant. This mutation was only found in 1 (0.5%) in our healthy control samples (odds ratio = 16.99, 95% CI: 2.29 to 126.21, p = 0.0002). In both groups, there were no deviations from HWE at this G7153A locus. None of the patients with the 2385R variant had a family history of PD. Age of onset for the 2385R carriers was 33–79 years (mean 61.5 ± 11.3 years). Meanwhile, age of onset of 285 PD cases without the 2385R variant was 31–91 years (mean 61.9 ± 10.5 years). Sequencing of the entire open reading frame and flanking intronic sequence (>50 bp) of LRRK2 in 2385R carriers revealed no other coding variants.
The clinical presentations of all G2385R carriers showed no difference from typical idiopathic PD with definite asymmetric onset, bradykinesia, resting tremor (4–6 Hz), rigidity (Table 1). All carriers showed response to dopamine replacement therapy based on clinical observation.
LRRK2, encodes a protein called dardarin that is postulated as a member of the ROCO protein family. There are five conserved domains in this protein. The LRRK2 kinase domain belongs to the MAPKKK subfamily of kinases. The active sites of all kinases are located in a cleft between an N-terminal and a C-terminal lobe, typically covered by an activation loop in an inactive confirmation. The residue G2385 substitution lies in the WD40 domain. WD40 domain is speculated to be capable of of mediating protein-protein interactions . Hypothetically, LRRK2 G2385R variant may cause a conformational change of the WD40 domain of LRRK2. The functional effects of the G2385R substitution on dardarin have yet to be established.
The lack of the G2385 variant in other populations, except ethnic Chinese PD populations, highlights the fact that the contribution of different genetic factors varies amongst different populations . Furthermore, these discrepancies between mutation frequencies across different ethnicities worldwide lend support to the hypothesis of a founder effect. Our findings delineate LRRK2-related disease as a common form of sporadic PD in the Chinese population.
Based on our results, the G2385R variant contributes significantly to the etiology of PD in ethnic Han Chinese individuals. With consideration of the enormous and expanding aging Chinese population in mainland China and in Taiwan, this genetic variant is probably the most common known genetic risk factor for PD worldwide. A routine testing for this mutation at least in our population may be cost-effective. Though whether our finding extends to other Asian populations needs further verification. Complete analysis of the entire 51 exons of LRRK2 will be warranted before recommendations and guidelines for screening of LRRK2 in other ethnic PD patients for diagnostic purposes and genetic counselling be implemented globally.
In conclusion, our data suggest that the G2385R variant contributes significantly to the etiology of PD in ethnic Han Chinese individuals. With consideration of the enormous and expanding aging Chinese population in mainland China and in Taiwan, this variant is probably the most common known genetic factor for PD worldwide.
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The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2377/6/47/prepub
The authors would like to thank the Parkinson disease patients and the normal controls for participating in this study. This work was supported by the intramural programs of the National Institute on Aging and the National Institute on Neurological Disorders and Stroke (NINDS) and grants NSC94-2314-B-182A-059 and NSC-95-2314-B-182A-061 from the National Science Council, Executive Yuan. The study was also supported by grants from the Bogue Fellowship of University College London and the Chang Gung Memorial Hospital Biomedical Scholarship to HCF.
The author(s) declare that they have no competing interests.
HCF carried out the molecular genetic studies participated in the sequence alignment and drafted the manuscript. CMC and YRW participate in the design of the study and collection of data. JH participated in the study, and participated in its design and coordination. ABS conceived of the study and a critical review of the manuscript. All authors read and approved the final manuscript.
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Fung, HC., Chen, CM., Hardy, J. et al. A common genetic factor for Parkinson disease in ethnic Chinese population in Taiwan. BMC Neurol 6, 47 (2006). https://doi.org/10.1186/1471-2377-6-47