This article has Open Peer Review reports available.
A novel cell immunoassay to measure survival of motor neurons protein in blood cells
© Kolb et al; licensee BioMed Central Ltd. 2006
Received: 06 September 2005
Accepted: 01 February 2006
Published: 01 February 2006
The motor neuron degenerative disease spinal muscular atrophy (SMA) is the leading genetic cause of infant mortality and is caused by mutations in the survival of motor neurons (SMN) gene that reduce the expression levels of the SMN protein. A major goal of current therapeutic approaches is to increase SMN levels in SMA patients. The purpose of this study was to develop a reliable assay to measure SMN protein levels from peripheral blood samples.
We developed a novel cell immunoassay to quantitatively measure SMN levels from peripheral blood mononuclear cells (PBMCs) using a single anti-SMN antibody.
SMN levels determined by the cell immunoassay are comparable to levels determined by Western blot, but in contrast, the immunoassay does not involve cell lysis, requires a small amount of patient material, and can be done on a large number of samples simultaneously. SMN levels from PBMCs are not influenced by cell type heterogeneity.
SMN levels measured from total PBMCs provide an important snapshot of SMN protein expression, which should be a useful aid in SMA diagnosis, and a surrogate marker of efficacy of treatment in SMA clinical trials.
Spinal muscular atrophy (SMA) is one of the most common autosomal recessive diseases, affecting approximately 1 in 6,000 to 10,000 live births, and is the leading hereditary cause of infant mortality [1, 2]. SMA is a neurodegenerative disease of motor neurons that results in progressive muscle weakness and death from respiratory failure, and is caused by mutations in the survival of motor neurons (SMN) gene . These mutations result in a reduction in SMN protein expression and several studies have shown that SMN protein levels are reduced in cell lines and tissues derived from type I SMA patients compared to controls [4–7]. An obvious therapeutic strategy for this disease is, therefore, to attempt to increase SMN expression levels.
In recent years, several drugs have been shown to increase SMN mRNA and/or protein levels in cultured cells [8–16]. As a result, many of these compounds currently are, or are planned to be, in clinical trials. The design of therapeutic clinical trials for SMA patients hinges upon the expectation that survival or objective improvement in phenotype will be achieved. These benefits, if they are to occur, are long-term outcomes . Thus, there is a need for biochemical surrogate assays to determine whether SMN levels are affected in patients that receive such treatments. SMN mRNA has been measured in blood by quantitative RT-PCR in a small number of patients in one previous study , however RT-PCR requires amplification of patient material and mRNA levels do not necessarily correlate with the amount of protein expressed in the cells.
We have developed a cell immunoassay to measure SMN levels in peripheral blood samples. We further compare this assay with the standard Western blot method for quantifying SMN protein and show that this method is feasible for use with patient blood samples during clinical trials.
Lymphoblastoid cell lines GM12497 (derived from a 7 month old control patient) and GM10684 (derived from a 6 month old type I SMA patient) were purchased from Coriell Cell Repositories (New Jersey) and maintained in RPMI media with 10% fetal bovine serum.
Subjects and blood draws
Blood samples from anonymous, control individuals were collected in the department of transfusion medicine at the NIH as part of an NIH IRB approved protocol. Peripheral blood mononuclear cells (PBMCs) were isolated by standard Ficoll density gradient centrifugation, resuspended in fetal bovine serum with 10% DMSO and were cryopreserved. Pooled monocytes and lymphocytes were also obtained from the department of transfusion medicine at the NIH. Cells were then sent by overnight courier to the University of Pennsylvania on dry ice for protein level determination.
The anti-SMN (62E7) and anti-Y14 (1F12) monoclonal antibodies have been described previously [19, 20]. The anti-mouse IgG secondary antibody labeled with IRDye ®800 (Rockland) was used at 1:5000. Proteins from 20 μg of total extracts were separated on NuPAGE® 4–12% Bis-Tris gels (Invitrogen) and transferred to nitrocellulose membranes. Quantitative immunoblotting was performed as suggested by the manufacturer (Li-Cor). The membranes were scanned on an Odyssey® infrared imaging system (Li-Cor), and the intensity of the protein bands was analyzed using the software provided by the manufacturer.
Surrogate SMN level cell immunoassay
Cell immunoassays to determine SMN protein levels were performed using black, clear-bottomed 96-well plates pre-coated with poly-ornithine (Sigma M0562). Immediately before the assay, cryopreserved PBMC samples were thawed, washed in phosphate-buffered saline (PBS) and counted with an automated NucleoCounter cell counter (New Brunswick Scientific). 1.5 × 105 cells/well were adhered to the well bottom by centrifugation (700 × g) for 5 minutes at room temperature. The cells were then fixed to the plate with 2.5% formaldehyde for 30 min and washed in PBS. All washes were performed with PBS using a Biotek ELX405 automatic plate washer. Cells were permeabilized with 0.1% Triton for 5 min and blocked with 20% FBS for 1 hour. The antibody used for the immunosorbant assay was monoclonal antibody 2B1 (1:500) against SMN. The plates were washed, and bound antibodies were detected using peroxidase-conjugated goat anti-mouse IgG (Jackson ImmunoResearch) and Supersignal® ELISA Femto Maximum Sensitivity Substrate (Pierce). The luminescent intensity within each well was measured using a Perkin Elmer Victor2 plate reader. Signal background was determined for each sample by omitting the primary antibody.
All error bars are standard deviation from the mean. The cell number titration data was fitted to a sigmoid curve using IGor.
Results and discussion
The SMN protein cell immunoassay compares SMN expression in an equivalent number of PBMC cells and does not depend on a stable endogenous control. Nonetheless, the use of Y14 as a stable endogenous control in these experiments, as would be done for Western blot analysis, lends further confidence in the assay to detect specific changes in SMN expression between two well-characterized cell lines. The SMN protein cell immunoassay method does not require cell lysis as do western blotting and sandwich ELISA methods. Moreover, there is no transfer of protein to a membrane and a relatively small amount of biological sample is required. We find that SMN levels can be measured in triplicate from a 5 to 8 ml sample of peripheral blood.
Nucleated cells from blood were chosen for protein determinations because the SMN protein is found both in the cytoplasm and the nucleus of cells. The measurement of SMN in the PBMC is valid despite the fact that the cell type composition of the PBMC can vary between individuals and even within the same individual at different times. We addressed the issue of cell type heterogeneity by measuring SMN in pure populations of PBMC components and found no effect of cell type composition. Recently, we also described a reliable assay to measure a well established function of the SMN protein, small nuclear ribonucleoprotein (snRNP) assembly [21, 22]. In combination, the SMN protein cell immunoassay, described here, with the SMN activity assay can be used to gain insight into the regulation of SMN protein expression and activity. These new assays may significantly add to the present methods available to study SMA.
We describe a simple cell immunoassay to measure SMN levels in peripheral blood samples. This assay requires a small amount of patient material and can be done on a large number of samples simultaneously. The ability to measure SMN levels from peripheral blood samples provides an important snapshot of SMN expression that can be used as a surrogate outcome measure in ongoing and future SMA clinical trials.
We thank members of our laboratories for stimulating discussions and helpful comments on this manuscript and to Terrence Lau for curve fitting assistance. We are also grateful to Gina Daly for secretarial assistance. This work was supported by the Association Française Contre les Myopathies (AFM) to GD. S.J.K is supported by the MDA (MDA3867). C.J.S. is supported by an NINDS Career Transition Award (K22-NS0048199-01) and is the recipient of a Spinal Muscular Atrophy Foundation Award. CJS, GGH and KHF are supported by the Intramural Research Program of the NIH. G.D. is an Investigator of the Howard Hughes Medical Institute.
- Pearn J: Classification of spinal muscular atrophies. Lancet. 1980, 1: 919-922. 10.1016/S0140-6736(80)90847-8.View ArticlePubMedGoogle Scholar
- Crawford TO, Pardo CA: The neurobiology of childhood spinal muscular atrophy. Neurobiol Dis. 1996, 3: 97-110. 10.1006/nbdi.1996.0010.View ArticlePubMedGoogle Scholar
- Lefebvre S, Burglen L, Reboullet S, Clermont O, Burlet P, Viollet L, Benichou B, Cruaud C, Millasseau P, Zeviani M, et al: Identification and characterization of a spinal muscular atrophy-determining gene. Cell. 1995, 80: 155-165. 10.1016/0092-8674(95)90460-3.View ArticlePubMedGoogle Scholar
- Lefebvre S, Burlet P, Liu Q, Bertrandy S, Clermont O, Munnich A, Dreyfuss G, Melki J: Correlation between severity and SMN protein level in spinal muscular atrophy. Nat Genet. 1997, 16: 265-269. 10.1038/ng0797-265.View ArticlePubMedGoogle Scholar
- Coovert DD, Le TT, McAndrew PE, Strasswimmer J, Crawford TO, Mendell JR, Coulson SE, Androphy EJ, Prior TW, Burghes AH: The survival motor neuron protein in spinal muscular atrophy. Hum Mol Genet. 1997, 6: 1205-1214. 10.1093/hmg/6.8.1205.View ArticlePubMedGoogle Scholar
- Gavrilov DK, Shi X, Das K, Gilliam TC, Wang CH: Differential SMN2 expression associated with SMA severity. Nat Genet. 1998, 20: 230-231. 10.1038/3030.View ArticlePubMedGoogle Scholar
- Soler-Botija C, Cusco I, Caselles L, Lopez E, Baiget M, Tizzano EF: Implication of fetal SMN2 expression in type I SMA pathogenesis: protection or pathological gain of function?. J Neuropathol Exp Neurol. 2005, 64: 215-223.View ArticlePubMedGoogle Scholar
- Chang JG, Hsieh-Li HM, Jong YJ, Wang NM, Tsai CH, Li H: Treatment of spinal muscular atrophy by sodium butyrate. Proc Natl Acad Sci U S A. 2001, 98: 9808-9813. 10.1073/pnas.171105098.View ArticlePubMedPubMed CentralGoogle Scholar
- Andreassi C, Jarecki J, Zhou J, Coovert DD, Monani UR, Chen X, Whitney M, Pollok B, Zhang M, Androphy E, Burghes AH: Aclarubicin treatment restores SMN levels to cells derived from type I spinal muscular atrophy patients. Hum Mol Genet. 2001, 10: 2841-2849. 10.1093/hmg/10.24.2841.View ArticlePubMedGoogle Scholar
- Sumner CJ, Huynh TN, Markowitz JA, Perhac JS, Hill B, Coovert DD, Schussler K, Chen X, Jarecki J, Burghes AH, Taylor JP, Fischbeck KH: Valproic acid increases SMN levels in spinal muscular atrophy patient cells. Ann Neurol. 2003, 54: 647-654. 10.1002/ana.10743.View ArticlePubMedGoogle Scholar
- Brichta L, Hofmann Y, Hahnen E, Siebzehnrubl FA, Raschke H, Blumcke I, Eyupoglu IY, Wirth B: Valproic acid increases the SMN2 protein level: a well-known drug as a potential therapy for spinal muscular atrophy. Hum Mol Genet. 2003, 12: 2481-2489. 10.1093/hmg/ddg256.View ArticlePubMedGoogle Scholar
- Andreassi C, Angelozzi C, Tiziano FD, Vitali T, De Vincenzi E, Boninsegna A, Villanova M, Bertini E, Pini A, Neri G, Brahe C: Phenylbutyrate increases SMN expression in vitro: relevance for treatment of spinal muscular atrophy. Eur J Hum Genet. 2004, 12: 59-65. 10.1038/sj.ejhg.5201102.View ArticlePubMedGoogle Scholar
- Jarecki J, Chen X, Bernardino A, Coovert DD, Whitney M, Burghes A, Stack J, Pollok BA: Diverse small-molecule modulators of SMN expression found by high-throughput compound screening: early leads towards a therapeutic for spinal muscular atrophy. Hum Mol Genet. 2005, 14: 2003-2018. 10.1093/hmg/ddi205.View ArticlePubMedGoogle Scholar
- Grzeschik SM, Ganta M, Prior TW, Heavlin WD, Wang CH: Hydroxyurea enhances SMN2 gene expression in spinal muscular atrophy cells. Ann Neurol. 2005, 58: 194-202. 10.1002/ana.20548.View ArticlePubMedGoogle Scholar
- Lunn MR, Root DE, Martino AM, Flaherty SP, Kelley BP, Coovert DD, Burghes AH, Man NT, Morris GE, Zhou J, Androphy EJ, Sumner CJ, Stockwell BR: Indoprofen upregulates the survival motor neuron protein through a cyclooxygenase-independent mechanism. Chem Biol. 2004, 11: 1489-1493. 10.1016/j.chembiol.2004.08.024.View ArticlePubMedPubMed CentralGoogle Scholar
- Wolstencroft EC, Mattis V, Bajer AA, Young PJ, Lorson CL: A non-sequence-specific requirement for SMN protein activity: the role of aminoglycosides in inducing elevated SMN protein levels. Hum Mol Genet. 2005, 14: 1199-1210. 10.1093/hmg/ddi131.View ArticlePubMedGoogle Scholar
- Crawford TO: Concerns about the design of clinical trials for spinal muscular atrophy. Neuromuscul Disord. 2004, 14: 456-460. 10.1016/j.nmd.2004.04.004.View ArticlePubMedGoogle Scholar
- Brahe C, Vitali T, Tiziano FD, Angelozzi C, Pinto AM, Borgo F, Moscato U, Bertini E, Mercuri E, Neri G: Phenylbutyrate increases SMN gene expression in spinal muscular atrophy patients. Eur J Hum Genet. 2005, 13: 256-259. 10.1038/sj.ejhg.5201320.View ArticlePubMedGoogle Scholar
- Liu Q, Fischer U, Wang F, Dreyfuss G: The spinal muscular atrophy disease gene product, SMN, and its associated protein SIP1 are in a complex with spliceosomal snRNP proteins. Cell. 1997, 90: 1013-1021. 10.1016/S0092-8674(00)80367-0.View ArticlePubMedGoogle Scholar
- Kim VN, Yong J, Kataoka N, Abel L, Diem MD, Dreyfuss G: The Y14 protein communicates to the cytoplasm the position of exon-exon junctions. Embo J. 2001, 20: 2062-2068. 10.1093/emboj/20.8.2062.View ArticlePubMedPubMed CentralGoogle Scholar
- Wan L, Battle DJ, Yong J, Gubitz AK, Kolb SJ, Wang J, Dreyfuss G: The Survival of Motor Neurons Protein Determines the Capacity for snRNP Assembly: Biochemical Deficiency in Spinal Muscular Atrophy. Mol Cell Biol. 2005, 25: 5543-5551. 10.1128/MCB.25.13.5543-5551.2005.View ArticlePubMedPubMed CentralGoogle Scholar
- Yong J, Wan L, Dreyfuss G: Why do cells need an assembly machine for RNA-protein complexes?. Trends Cell Biol. 2004, 14: 226-232. 10.1016/j.tcb.2004.03.010.View ArticlePubMedGoogle Scholar
- The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2377/6/6/prepub
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.